STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_0996Methyltransferase type 12; PFAM: Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: pca:Pcar_0025 hypothetical protein. (159 aa)    
Predicted Functional Partners:
Acid_0997
PFAM: AMP-dependent synthetase and ligase; KEGG: reu:Reut_A0648 malonyl-CoA synthase.
       0.773
Acid_0998
PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B1842 major facilitator superfamily (MFS)metabolite/H+ symporter.
       0.773
Acid_0999
KEGG: aba:Acid345_2538 kinase-like protein.
   
   0.769
Acid_0995
Hypothetical protein.
       0.566
Acid_1000
KEGG: ava:Ava_2498 protein of unknown function DUF433.
       0.433
Acid_1001
Hypothetical protein.
       0.433
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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