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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1024KEGG: aba:Acid345_4220 hypothetical protein. (346 aa)    
Predicted Functional Partners:
Acid_1644
PFAM: Cna B domain protein; KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.774
Acid_3638
PFAM: Cna B domain protein; KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.774
Acid_5882
PFAM: Cna B domain protein; KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.774
Acid_7005
KEGG: aba:Acid345_3525 Cna B-type protein.
  
     0.774
Acid_1568
KEGG: aba:Acid345_2141 hypothetical protein.
  
    0.773
Acid_5952
KEGG: aba:Acid345_4154 TonB-dependent receptor.
  
     0.773
Acid_7376
Hypothetical protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.773
Acid_1773
PFAM: Cna B domain protein; KEGG: aba:Acid345_0900 hypothetical protein.
  
     0.772
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
    0.772
Acid_5152
KEGG: aba:Acid345_2136 TonB-dependent receptor.
  
     0.772
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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