STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_10424Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (86 aa)    
Predicted Functional Partners:
Acid_6996
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0730 pyruvate--ferredoxin (flavodoxin) oxidoreductase.
  
 
 0.754
Acid_0577
KEGG: rba:RB11948 probable secreted protein, putative xanthan lyase related.
  
 
 0.698
Acid_4005
Hypothetical protein; KEGG: bth:BT2458 putative pyridine nucleotide-disulphide oxidoreductase.
  
 
 0.698
Acid_7402
KEGG: tfu:Tfu_2452 succinate dehydrogenase or fumarate reductase, flavoprotein subunit, low-GC gram-positive bacteria; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 
 0.698
Acid_1870
2-oxoisovalerate ferredoxin oxidoreductase beta subunit; PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: aba:Acid345_0953 thiamine pyrophosphate enzyme-like TPP-binding.
  
 
 0.654
Acid_7693
PFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: aba:Acid345_0598 pyruvate flavodoxin/ferredoxin oxidoreductase-like.
  
 
 0.653
Acid_1043
UDP-glucose pyrophosphorylase; TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: aba:Acid345_4550 UTP-glucose-1-phosphate uridylyltransferase.
       0.545
Acid_5018
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dps:DP2209 probable NADH dehydrogenase (ubiquinone) I, chain F.
     
 0.420
Acid_3476
MOSC domain containing protein; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; MOSC domain containing protein; Oxidoreductase FAD-binding domain protein; KEGG: aba:Acid345_2660 MOSC ferredoxin--oxidoreductase.
     
 0.404
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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