STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1049KEGG: plt:Plut_0517 hypothetical protein. (194 aa)    
Predicted Functional Partners:
Acid_1047
KEGG: sat:SYN_01816 hypothetical cytosolic protein.
 
     0.952
Acid_1048
KEGG: pca:Pcar_1809 hypothetical protein.
 
     0.952
Acid_1050
KEGG: pca:Pcar_1811 hypothetical protein.
 
     0.952
Acid_1051
Transcriptional regulator, Fis family.
       0.564
Acid_1056
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: gme:Gmet_1669 TonB-dependent receptor, plug.
 
     0.467
Acid_1052
PFAM: transcriptional regulator PadR family protein.
       0.465
Acid_1053
Hypothetical protein.
       0.465
Acid_1054
PFAM: ADP-ribosylation/Crystallin J1; KEGG: afu:AF1724 dinitrogenase reductase activating glycohydrolase.
       0.465
Acid_1055
PFAM: FAD linked oxidase domain protein; KEGG: gka:GK1532 glycolate oxidase subunit.
       0.465
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.