STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1060PFAM: type II and III secretion system protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1997 type II and III secretion system protein; Belongs to the bacterial secretin family. (872 aa)    
Predicted Functional Partners:
Acid_1061
KEGG: aba:Acid345_1998 general secretion pathway protein G.
 
  
 0.956
Acid_1062
KEGG: aba:Acid345_1999 general secretion pathway protein G.
 
  
 0.955
Acid_1600
PFAM: type II and III secretion system protein; KEGG: aba:Acid345_2522 TPR repeat protein; Belongs to the bacterial secretin family.
  
  
 
0.928
Acid_7789
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0761 general secretion pathway protein D; Belongs to the bacterial secretin family.
  
  
 
0.925
Acid_0045
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: aba:Acid345_1576 type II secretion system protein E.
 
  
 0.787
Acid_1063
Hypothetical protein; KEGG: rpd:RPD_3003 outer membrane autotransporter barrel.
       0.773
Acid_0044
PFAM: type II secretion system protein; KEGG: aba:Acid345_1575 type II secretion system protein.
 
  
 0.749
Acid_0050
KEGG: aba:Acid345_1580 hypothetical protein.
  
     0.740
Acid_5821
PFAM: permease YjgP/YjgQ family protein; KEGG: aba:Acid345_1515 transporter, YjgP/YjgQ family.
  
    0.727
Acid_6470
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aba:Acid345_0248 surface antigen (D15).
  
     0.716
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.