STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1085PFAM: histone deacetylase superfamily; KEGG: aba:Acid345_3902 histone deacetylase superfamily. (305 aa)    
Predicted Functional Partners:
Acid_7729
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: aba:Acid345_1280 amine oxidase.
   
 0.878
Acid_3907
PFAM: SNF2-related protein; helicase domain protein; zinc finger, SWIM domain protein; SMART: DEAD-like helicases-like; KEGG: dvu:DVU2085 SNF2 family protein.
    
 0.861
Acid_1602
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mca:MCA0908 ATPase, AAA family.
   
 0.806
Acid_7192
PFAM: nuclear protein SET; SMART: SET-related domain protein; KEGG: cel:C26E6.9b Set (trithorax/polycomb) domain containing protein 2, isoform b.
  
 0.796
Acid_1084
KEGG: tte:TTE1482 phosphotransacetylase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase.
     
 0.759
Acid_1083
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A.
       0.619
cobB
PFAM: Silent information regulator protein Sir2; KEGG: aae:aq_2170 hypothetical protein; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.612
Acid_3182
PFAM: phosphoribulokinase/uridine kinase; KEGG: aba:Acid345_3054 uridine kinase; Belongs to the uridine kinase family.
   
 0.579
Acid_1082
Maf protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.542
Acid_1036
KEGG: aba:Acid345_1717 hypothetical protein.
    
 0.465
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.