STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1120PFAM: amidohydrolase; KEGG: gvi:gll3395 similar to Xaa-Pro dipeptidase. (261 aa)    
Predicted Functional Partners:
Acid_1794
PFAM: amidohydrolase; KEGG: aba:Acid345_2556 amidohydrolase.
  
     0.767
Acid_3398
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_3066 amidohydrolase.
  
     0.765
Acid_4703
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_0971 amidohydrolase 3.
  
     0.760
Acid_6576
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL0310 secreted metal-dependent hydrolase, amidohydrolase family.
  
     0.759
Acid_5495
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: mxa:MXAN_2375 amidohydrolase domain protein.
  
     0.739
Acid_1969
PFAM: amidohydrolase; KEGG: aba:Acid345_1826 amidohydrolase.
  
     0.737
Acid_7923
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_1826 amidohydrolase.
  
     0.737
Acid_3239
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: aba:Acid345_1826 amidohydrolase.
  
     0.733
Acid_0080
ABC-2 type transporter; PFAM: amidohydrolase; Amidohydrolase 3; ABC-2 type transporter; KEGG: eli:ELI_06150 Xaa-Pro dipeptidase, putative.
  
     0.730
Acid_2282
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ilo:IL2101 amidohydrolase family enzyme.
  
     0.701
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.