Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1122Dipeptidyl aminopeptidases/acylaminoacyl-peptidase-like protein; KEGG: eca:ECA3785 hypothetical protein. (406 aa)    
Predicted Functional Partners:
Acid_1121
KEGG: aba:Acid345_4732 hypothetical protein.
       0.773
Acid_6139
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12844 hypothetical protein.
  
     0.764
Acid_1949
PFAM: FG-GAP repeat protein; KEGG: rba:RB13131 similar to cysteine proteinase.
  
     0.759
Acid_6766
PFAM: FG-GAP repeat protein; KEGG: rba:RB13131 similar to cysteine proteinase.
  
     0.757
Acid_6268
Hypothetical protein.
  
     0.754
Acid_4187
Hypothetical protein; KEGG: dvu:DVUA0058 BNR/Asp-box repeat protein.
  
     0.753
Acid_1933
Hypothetical protein; KEGG: rba:RB13131 similar to cysteine proteinase.
  
     0.750
Acid_6134
PFAM: cytochrome c, class I; KEGG: pfo:Pfl_1824 cytochrome c oxidase cbb3-type, subunit III.
  
     0.729
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.723
Acid_1864
KEGG: rba:RB728 conserved hypothetical protein, putative cytochrome c.
  
    0.722
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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