STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1185PFAM: protein of unknown function DUF480; KEGG: aba:Acid345_3645 protein of unknown function DUF480; Belongs to the UPF0502 family. (214 aa)    
Predicted Functional Partners:
Acid_1186
TIGRFAM: squalene/oxidosqualene cyclases; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; KEGG: aba:Acid345_1740 squalene cyclase.
       0.569
Acid_1184
KEGG: aba:Acid345_1261 hypothetical protein.
       0.551
Acid_1183
PFAM: Pyrrolo-quinoline quinone; KEGG: gcd-1; glucose dehydrogenase.
       0.494
Acid_7799
PFAM: proteinase inhibitor I11, ecotin; KEGG: yps:YPTB1251 putative ecotin precursor.
  
     0.494
Acid_1182
PFAM: Pyridoxal-dependent decarboxylase; KEGG: tyrosine decarboxylase, putative.
       0.468
Acid_1187
CTP synthase; KEGG: pfl:PFL_4536 hypothetical protein.
       0.439
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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