STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1235RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ade:Adeh_0230 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)    
Predicted Functional Partners:
Acid_1237
Hypothetical protein.
  
    0.777
Acid_0698
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: pca:Pcar_3124 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Acid_2114
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_2693 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Acid_5135
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: sde:Sde_1647 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Acid_5720
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_4527 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Acid_7940
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: aba:Acid345_2693 sigma-24, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.774
Acid_1236
Hypothetical protein.
       0.773
Acid_1020
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: bxe:Bxe_A1078 sigma-24 (FecI); Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.771
Acid_2147
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: mlo:mll1867 probable RNA polymerase sigma subunit; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.769
Acid_2482
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rba:RB6643 probable RNA polymerase ECF-type sigma factor.
  
     0.769
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.