STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1249PFAM: Pectinesterase; KEGG: bth:BT4109 putative pectinesterase precursor. (517 aa)    
Predicted Functional Partners:
Acid_7770
PFAM: glycoside hydrolase, family 28; KEGG: rso:RSp0880 polygalacturonase precursor (pectinase) signal peptide protein; Belongs to the glycosyl hydrolase 28 family.
  
 0.980
Acid_1098
TIGRFAM: pectate lyase; PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT2254 putative pectate lyase.
   
 0.967
Acid_5759
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: rba:RB3639 hypothetical protein.
   
 0.943
Acid_1250
PFAM: glycoside hydrolase, family 28; SMART: Parallel beta-helix repeat; KEGG: bth:BT1018 polygalacturonase (pectinase); Belongs to the glycosyl hydrolase 28 family.
   
 0.919
Acid_7771
PFAM: Pectinesterase; KEGG: bja:blr1994 probable pectinesterase.
  
  
 
0.916
Acid_4052
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4150 putative rhamnogalacturonan acetylesterase.
   
 0.847
Acid_7480
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: bth:BT4173 putative rhamnogalacturonan acetylesterase.
   
 0.808
Acid_7773
PFAM: glycoside hydrolase, family 28; KEGG: bld:BLi03511 hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
   
 0.806
Acid_4057
PFAM: glycoside hydrolase, family 28; SMART: Parallel beta-helix repeat; KEGG: bth:BT4149 exo-poly-alpha-D-galacturonosidase precursor; Belongs to the glycosyl hydrolase 28 family.
   
 0.800
Acid_0671
PFAM: glycoside hydrolase, family 28; KEGG: oih:OB2088 hypothetical protein; Belongs to the glycosyl hydrolase 28 family.
   
 0.798
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.