STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1306Hypothetical protein; KEGG: aba:Acid345_1501 TonB-dependent receptor. (1129 aa)    
Predicted Functional Partners:
Acid_1280
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein.
  
   0.790
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.772
Acid_1024
KEGG: aba:Acid345_4220 hypothetical protein.
  
     0.767
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
     0.763
Acid_2410
PFAM: Radical SAM domain protein; KEGG: aba:Acid345_0793 Fe-S protein, radical SAM family.
  
     0.753
Acid_4832
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A.
  
     0.753
Acid_1568
KEGG: aba:Acid345_2141 hypothetical protein.
  
     0.750
Acid_7266
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_3344 von Willebrand factor, type A.
  
     0.745
Acid_5910
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A.
  
     0.741
Acid_1646
KEGG: aba:Acid345_3357 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.740
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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