STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1351KEGG: aba:Acid345_3971 putative secreted protein. (184 aa)    
Predicted Functional Partners:
Acid_1350
KEGG: aba:Acid345_3970 hypothetical protein.
 
     0.952
Acid_5499
Hypothetical protein.
  
     0.687
Acid_2371
PFAM: high-affinity nickel-transporter; KEGG: gvi:glr3327 hypothetical protein.
  
     0.639
Acid_5966
KEGG: sma:SAV511 hypothetical protein.
  
     0.638
Acid_2980
KEGG: sco:SCO7476 secreted protein.
  
     0.635
Acid_0140
PFAM: glycoside hydrolase, family 18; SMART: chitinase II; KEGG: hch:HCH_00869 chitinase.
  
     0.608
Acid_1623
PFAM: Integrase, catalytic region; KEGG: lil:LA1768 integrase core domain containing protein.
  
     0.600
Acid_0259
KEGG: tfu:Tfu_2984 hypothetical protein.
  
     0.577
Acid_1791
KEGG: ava:Ava_0969 putative amino acid transporter.
  
     0.566
Acid_0652
PFAM: transcriptional regulator PadR family protein; KEGG: gvi:gll1202 hypothetical protein.
  
     0.565
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.