STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1364PFAM: acyl-protein synthetase, LuxE; KEGG: mhu:Mhun_3157 acyl-protein synthetase, LuxE. (359 aa)    
Predicted Functional Partners:
Acid_1365
KEGG: mhu:Mhun_3113 acyl protein synthase/acyl-CoA reductase RfbN.
 
 0.997
Acid_1363
PFAM: AMP-dependent synthetase and ligase; KEGG: sme:SMc00592 hypothetical, transmembrane protein.
   
 0.978
Acid_1361
KEGG: mhu:Mhun_3159 acyl carrier protein.
 
  
 0.952
Acid_1362
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bha:BH2491 3-oxoacyl-(acyl-carrier protein) reductase.
 
   
 0.826
Acid_1366
PFAM: Radical SAM domain protein; KEGG: plt:Plut_1375 Fe-S oxidoreductase-like.
 
    0.617
Acid_1360
Hypothetical protein.
       0.593
Acid_1359
PFAM: glycosyl transferase, group 1; KEGG: mbu:Mbur_0725 glycosyl transferase, group 1.
       0.562
Acid_0680
TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: tfu:Tfu_0687 methylmalonate-semialdehyde dehydrogenase.
 
 
 0.548
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
 
  
 0.492
Acid_0037
PFAM: aldehyde dehydrogenase; KEGG: oih:OB0492 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.487
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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