STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1426PFAM: OmpA/MotB domain protein; KEGG: aba:Acid345_3118 outer membrane protein, OmpA/MotB family. (262 aa)    
Predicted Functional Partners:
Acid_0509
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aba:Acid345_0595 MotA/TolQ/ExbB proton channel.
 
   
 0.736
Acid_1281
PFAM: MotA/TolQ/ExbB proton channel; KEGG: aba:Acid345_0149 MotA/TolQ/ExbB proton channel.
 
   
 0.725
Acid_1283
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aba:Acid345_0151 biopolymer transport protein ExbD/TolR.
 
 
 
 0.641
Acid_1282
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aba:Acid345_0150 biopolymer transport protein ExbD/TolR.
 
 
 
 0.634
Acid_6470
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aba:Acid345_0248 surface antigen (D15).
  
 
 0.630
Acid_0510
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: aba:Acid345_0594 biopolymer transport protein ExbD/TolR.
 
 
 
 0.621
Acid_1033
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_3567 lipoprotein releasing system, transmembrane protein, LolC/E family.
  
 
 
 0.619
Acid_0748
PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: aba:Acid345_2476 surface antigen (D15).
  
 
 0.606
Acid_0512
PFAM: WD40 domain protein beta Propeller; KEGG: aba:Acid345_0592 TolB-like protein.
  
   0.569
Acid_5356
PFAM: OmpA/MotB domain protein; KEGG: tbd:Tbd_0244 probable outer membrane protein.
  
     0.568
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.