STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1437KEGG: bth:BT2809 putative integral membrane protein. (349 aa)    
Predicted Functional Partners:
Acid_4406
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4312 sugar phosphate isomerases/epimerases.
  
     0.716
Acid_2048
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4312 sugar phosphate isomerases/epimerases.
  
     0.638
Acid_2607
KEGG: bth:BT3585 putative oxidoreductase.
  
     0.625
Acid_7196
KEGG: gvi:glr2033 hypothetical protein.
  
     0.608
Acid_1438
PFAM: glycosyl transferase, family 39; KEGG: aba:Acid345_4212 glycosyl transferase, family 39.
       0.596
Acid_4275
KEGG: rba:RB4014 probable acetyl xylan esterase.
  
     0.589
Acid_6247
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: rba:RB9026 probable NADH-dependent dyhydrogenase.
  
     0.579
Acid_5421
Hypothetical protein; KEGG: dge:Dgeo_2666 glycosyl hydrolase family 98, putative carbohydrate binding module.
  
     0.570
Acid_4741
KEGG: bth:BT3180 hypothetical protein.
  
     0.567
Acid_4187
Hypothetical protein; KEGG: dvu:DVUA0058 BNR/Asp-box repeat protein.
  
     0.529
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.