STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1508PFAM: Acetamidase/Formamidase; KEGG: ret:RHE_PB00087 probable acetamidase/formamidase protein. (332 aa)    
Predicted Functional Partners:
Acid_4063
PFAM: Acetamidase/Formamidase; KEGG: ret:RHE_PB00087 probable acetamidase/formamidase protein.
  
  
 
0.914
Acid_5428
PFAM: Acetamidase/Formamidase; KEGG: ret:RHE_PB00087 probable acetamidase/formamidase protein.
  
  
 
0.912
Acid_3497
PFAM: Amidase; KEGG: lpp:lpp2304 amidase; Belongs to the amidase family.
  
 
 0.905
Acid_4346
PFAM: Amidase; KEGG: reu:Reut_B5142 amidase.
  
 
 0.905
Acid_5263
PFAM: Amidase; KEGG: aba:Acid345_1685 amidase; Belongs to the amidase family.
  
 
 0.905
Acid_5967
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pol:Bpro_3376 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
    
 0.905
Acid_5088
PFAM: aldehyde dehydrogenase; KEGG: noc:Noc_1710 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
  0.901
Acid_6729
PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_1381 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
   
 
  0.901
Acid_0248
PFAM: coenzyme A transferase; KEGG: sme:SMb20588 putative CoA-transferase subunit B protein.
     
  0.900
Acid_0249
PFAM: coenzyme A transferase; KEGG: pae:PA0226 probable CoA transferase, subunit A.
     
  0.900
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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