STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1539KEGG: aba:Acid345_4226 MutT/NUDIX family protein. (543 aa)    
Predicted Functional Partners:
Acid_1540
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sru:SRU_2227 hypothetical protein.
       0.773
Acid_2212
KEGG: ade:Adeh_4117 putative lipoprotein.
  
     0.686
Acid_6262
KEGG: ath:At2g35150 phosphate-responsive 1 family protein.
  
 
   0.678
Acid_2626
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.670
Acid_1541
PFAM: regulatory protein, MerR; KEGG: aba:Acid345_0264 transcriptional regulator, MerR family.
       0.631
Acid_4354
PFAM: Alg9 family protein mannosyltransferase; KEGG: nar:Saro_2282 Alg9-like mannosyltransferase.
  
     0.599
Acid_4353
PFAM: Alg9 family protein mannosyltransferase; KEGG: nar:Saro_2282 Alg9-like mannosyltransferase.
  
     0.597
Acid_1201
Conserved hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
  
     0.595
Acid_1542
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3570 ABC transporter, ATPase subunit.
       0.563
Acid_1543
KEGG: aba:Acid345_3571 hypothetical protein.
       0.563
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.