STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1555PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: aba:Acid345_1941 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase. (279 aa)    
Predicted Functional Partners:
Acid_1556
PFAM: Porphyromonas-type peptidyl-arginine deiminase; KEGG: aba:Acid345_1939 porphyromonas-type peptidyl-arginine deiminase; Belongs to the agmatine deiminase family.
 
 0.999
speE-2
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.910
speE
Spermine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
     
  0.900
Acid_4484
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: mta:Moth_2086 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
  
     0.642
Acid_1553
PFAM: NHL repeat containing protein; KEGG: bba:Bd0727 hypothetical protein.
  
    0.555
Acid_1554
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: aba:Acid345_2521 HAD-superfamily hydrolase, subfamily IA, variant 1.
  
    0.555
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
   
 0.476
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
     
 0.406
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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