STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1588Alpha-galactosidase; PFAM: glycoside hydrolase, clan GH-D; KEGG: aba:Acid345_1677 alpha-galactosidase. (518 aa)    
Predicted Functional Partners:
Acid_1472
PFAM: glycoside hydrolase, clan GH-D; KEGG: bha:BH1870 hypothetical protein.
 
  
0.930
Acid_7394
PFAM: glycoside hydrolase, clan GH-D; KEGG: ljo:LJ0261 alpha-galactosidase.
 
  
 0.923
Acid_0933
PFAM: glycoside hydrolase, clan GH-D; KEGG: sma:SAV1082 putative alpha-galactosidase.
 
  
 0.916
Acid_2820
Alpha-galactosidase; PFAM: glycoside hydrolase, clan GH-D; KEGG: aba:Acid345_1677 alpha-galactosidase.
 
  
0.907
Acid_0705
Alpha-galactosidase; PFAM: glycoside hydrolase, clan GH-D; KEGG: aba:Acid345_1677 alpha-galactosidase.
  
  
 
0.904
Acid_3941
KEGG: vpa:VP1163 putative alpha-1,6-galactosidase.
    
0.903
Acid_0193
Exo-alpha-sialidase; KEGG: sma:SAV5606 neuramidase.
     
  0.900
Acid_2079
PFAM: Glycosyl hydrolase family 32, N terminal domain protein; SMART: glycoside hydrolase, family 32; KEGG: bld:BLi04178 hypothetical protein.
     
  0.900
Acid_2871
PFAM: sulfatase; KEGG: rba:RB13148 iduronate-sulfatase or arylsulfatase A.
    
  0.900
Acid_6305
PFAM: sulfatase; KEGG: ptr:465478 steryl-sulfatase.
    
  0.900
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.