STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1593PFAM: ASPIC/UnbV domain protein; Tetratricopeptide TPR_2 repeat protein; FG-GAP repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0824 ASPIC/UnbV. (821 aa)    
Predicted Functional Partners:
Acid_1931
Hypothetical protein; KEGG: aba:Acid345_0920 ASPIC/UnbV.
 
  
 0.753
Acid_6162
PFAM: FG-GAP repeat protein; KEGG: ava:Ava_0582 integrins alpha chain.
  
     0.722
Acid_3833
KEGG: ddi:DDB0189138 hypothetical protein.
 
   
 0.562
Acid_1594
PFAM: regulatory protein GntR, HTH; KEGG: bld:BLi03185 GntR family transcriptional regulator.
  
    0.549
Acid_1595
PFAM: band 7 protein; KEGG: bcn:Bcen_5265 band 7 protein.
       0.546
Acid_7543
Periplasmic component of the Tol biopolymer transport system-like protein; KEGG: sme:SMc00162 hypothetical protein.
 
  
 0.517
Acid_1388
PFAM: TPR repeat-containing protein; WD40 domain protein beta Propeller; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bcn:Bcen_0549 TPR repeat.
  
  
 0.510
Acid_6078
KEGG: bth:BT4426 hypothetical protein.
 
  
 0.487
Acid_2762
Hypothetical protein; KEGG: yps:YPTB2368 oligogalacturonate lyase.
 
  
 0.483
Acid_4055
Hypothetical protein; KEGG: ppr:PBPRB1722 putative oligogalacturonate lyase.
 
  
 0.471
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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