STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1600PFAM: type II and III secretion system protein; KEGG: aba:Acid345_2522 TPR repeat protein; Belongs to the bacterial secretin family. (527 aa)    
Predicted Functional Partners:
Acid_7789
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: noc:Noc_0761 general secretion pathway protein D; Belongs to the bacterial secretin family.
  
  
 
0.929
Acid_1060
PFAM: type II and III secretion system protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1997 type II and III secretion system protein; Belongs to the bacterial secretin family.
  
  
 
0.928
Acid_7780
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: rso:RS02970 probable general secretion pathway gspG-related transmembrane protein.
 
  
 0.766
Acid_0044
PFAM: type II secretion system protein; KEGG: aba:Acid345_1575 type II secretion system protein.
 
  
 0.753
Acid_0045
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: aba:Acid345_1576 type II secretion system protein E.
 
  
 0.752
Acid_7779
PFAM: type II secretion system protein; KEGG: eba:ebA1619 general secretion pathway protein F.
 
  
 0.720
Acid_7778
KEGG: noc:Noc_2895 type II secretion system protein E; TIGRFAM: general secretory pathway protein E; PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase.
 
  
 0.717
lpxK
lipid-A-disaccharide synthase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
 
     0.577
Acid_1856
Serine phosphatase; PFAM: Forkhead-associated protein; GAF domain protein; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: aba:Acid345_2718 serine phosphatase.
  
  
 0.544
Acid_1601
PFAM: MscS Mechanosensitive ion channel; KEGG: ana:alr1196 hypothetical protein.
     
 0.542
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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