STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1649KEGG: cpf:CPF_0465 capsular polysaccharide biosynthesis protein. (236 aa)    
Predicted Functional Partners:
Acid_7288
PFAM: sugar transferase; KEGG: ade:Adeh_2455 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.953
Acid_1853
PFAM: PHP C-terminal domain protein; KEGG: aba:Acid345_1275 PHP-like phosphoesterase.
 
  
 0.871
Acid_1214
PFAM: sugar transferase; KEGG: gme:Gmet_2031 sugar transferase.
 
  
 0.857
Acid_6635
PFAM: sugar transferase; KEGG: bur:Bcep18194_C7401 undecaprenyl-phosphate galactosephosphotransferase.
 
  
 0.852
Acid_1647
PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein.
 
 
 0.850
Acid_4859
PFAM: sugar transferase; KEGG: bpe:BP0087 probable sugar transferase.
 
  
 0.848
Acid_1648
PFAM: lipopolysaccharide biosynthesis; KEGG: sat:SYN_00780 chain length determinant protein, Wzz-like protein.
  
 0.836
Acid_5018
PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; KEGG: dps:DP2209 probable NADH dehydrogenase (ubiquinone) I, chain F.
     
 0.831
Acid_4638
PFAM: polysaccharide export protein; KEGG: aba:Acid345_3311 polysaccharide export protein.
 
 
 0.790
Acid_4861
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD.
 
  
 0.688
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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