STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1761PFAM: protein of unknown function DUF52; KEGG: ade:Adeh_3308 protein of unknown function DUF52. (404 aa)    
Predicted Functional Partners:
Acid_1760
PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: aba:Acid345_1912 tRNA/rRNA methyltransferase (SpoU).
       0.773
Acid_1763
PFAM: peptidase S10, serine carboxypeptidase; KEGG: aba:Acid345_4003 peptidase S10, serine carboxypeptidase.
  
    0.643
Acid_1762
KEGG: aba:Acid345_4003 peptidase S10, serine carboxypeptidase.
       0.610
Acid_1759
PFAM: glycosyl transferase, family 2; KEGG: aba:Acid345_2286 glycosyl transferase, family 2.
       0.561
Acid_6147
KEGG: mma:MM1645 hypothetical protein.
  
     0.468
Acid_4790
PFAM: outer membrane chaperone Skp (OmpH); KEGG: hch:HCH_05242 outer membrane protein.
  
     0.439
Acid_1765
PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
  
    0.427
Acid_1764
PFAM: transcriptional regulator PadR family protein; KEGG: aba:Acid345_1284 transcriptional regulator, PadR-like family.
       0.426
Acid_2806
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4598 xylose isomerase-like TIM barrel.
  
     0.422
Acid_4520
PFAM: isochorismatase hydrolase; KEGG: ttj:TTHA0328 probable isochorismatase.
  
    0.400
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.