STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1778PFAM: Peptidoglycan-binding domain 1 protein; KEGG: aba:Acid345_0206 peptidoglycan-binding domain 1. (401 aa)    
Predicted Functional Partners:
Acid_1779
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: ath:At4g18360 (S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative.
       0.773
Acid_4900
KEGG: xoo:XOO2248 hypothetical protein.
 
  
 0.621
Acid_6997
ErfK/YbiS/YcfS/YnhG; KEGG: gme:Gmet_2505 ErfK/YbiS/YcfS/YnhG.
  
   
 0.608
Acid_1777
PFAM: MscS Mechanosensitive ion channel; KEGG: rpd:RPD_4048 MscS mechanosensitive ion channel.
 
     0.602
Acid_7877
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: aba:Acid345_1729 ErfK/YbiS/YcfS/YnhG.
 
  
 0.459
Acid_3222
KEGG: aba:Acid345_1594 hypothetical protein.
  
    0.426
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.