STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1787PFAM: PGAP1 family protein; KEGG: aba:Acid345_0349 hypothetical protein. (273 aa)    
Predicted Functional Partners:
Acid_5700
PFAM: AMP-dependent synthetase and ligase; KEGG: hch:HCH_04499 long-chain acyl-CoA synthetases (AMP-forming).
  
 
 0.901
Acid_2769
Monogalactosyldiacylglycerol synthase; KEGG: eba:ebA5591 hypothetical protein.
     
  0.900
Acid_7444
PFAM: AMP-dependent synthetase and ligase; KEGG: ade:Adeh_0925 AMP-dependent synthetase and ligase.
  
 
 0.857
Acid_1327
PFAM: AMP-dependent synthetase and ligase; KEGG: sma:SAV377 putative acyl-CoA synthetase, long-chain fatty acid:CoA ligase.
     
  0.800
Acid_1785
Diacylglycerol O-acyltransferase; PFAM: protein of unknown function UPF0089; KEGG: aba:Acid345_0357 protein of unknown function UPF0089.
  
     0.753
Acid_4317
PFAM: LVIVD repeat protein; KEGG: nar:Saro_2374 multihaem cytochrome.
  
     0.570
Acid_1788
KEGG: aba:Acid345_0350 hypothetical protein.
       0.565
Acid_2102
KEGG: aba:Acid345_0489 alpha/beta hydrolase.
 
   
 0.497
Acid_4318
PFAM: protein of unknown function DUF336; KEGG: nar:Saro_2376 hypothetical protein.
  
     0.485
Acid_4312
KEGG: nar:Saro_0299 hypothetical protein.
  
     0.484
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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