STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1810PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mma:MM0570 ABC transporter, ATP-binding protein. (269 aa)    
Predicted Functional Partners:
Acid_1811
Hypothetical protein.
       0.658
rnhA
RNase HI; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
      0.657
Acid_1812
Hypothetical protein.
       0.595
Acid_3750
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rba:RB1866 probable transport ATP-binding protein.
  
     0.573
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.569
Acid_2806
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4598 xylose isomerase-like TIM barrel.
  
     0.503
Acid_2303
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mka:MK0486 ATPase of the AAA+ class.
  
     0.499
Acid_1889
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2723 ABC transporter ATP-binding protein.
  
     0.489
Acid_6373
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH998 molybdenum ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
     0.486
Acid_6320
PFAM: Heat shock protein 70; KEGG: tma:TM0373 dnaK protein.
 
     0.483
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.