Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1817PFAM: TonB-dependent receptor; KEGG: nmu:Nmul_A1233 TonB-dependent receptor. (666 aa)    
Predicted Functional Partners:
Acid_1227
PFAM: Cna B domain protein; TonB-dependent receptor, plug; KEGG: aba:Acid345_0663 TonB-dependent receptor.
  
     0.686
Acid_5078
KEGG: aba:Acid345_4447 hypothetical protein.
  
     0.680
Acid_5396
KEGG: aba:Acid345_0395 hypothetical protein.
  
     0.675
Acid_4027
Hypothetical protein; KEGG: aba:Acid345_0625 Cna B-type protein.
  
     0.666
Acid_4224
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0395 hypothetical protein.
  
     0.635
Acid_2735
PFAM: glycosyl hydrolase, family 88; KEGG: bcl:ABC3274 unsaturated glucuronyl hydrolase.
  
     0.603
Acid_1353
Hypothetical protein; KEGG: aba:Acid345_0625 Cna B-type protein.
  
     0.593
Acid_7026
KEGG: ccr:CC0925 OmpA-related protein.
  
     0.559
Acid_5298
PFAM: DoxX family protein; KEGG: bja:bll7169 hypothetical protein.
  
     0.549
Acid_1818
Endothelin-converting enzyme 1; PFAM: peptidase M13, neprilysin; peptidase M13; KEGG: aba:Acid345_4515 endothelin-converting enzyme 1.
       0.545
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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