STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1828KEGG: ape:APE0340 hypothetical protein. (674 aa)    
Predicted Functional Partners:
Acid_1829
PFAM: Cna B domain protein; KEGG: aba:Acid345_0663 TonB-dependent receptor.
       0.737
Acid_3424
PFAM: carbohydrate kinase, FGGY; KEGG: bth:BT3763 rhamnulose kinase/L-fuculose kinase.
 
    0.669
Acid_1830
Hypothetical protein.
       0.625
Acid_5954
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sso:SSO3029 hypothetical protein.
  
     0.564
Acid_2655
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: pgi:PG1884 alpha-L-fucosidase precursor, putative.
 
  
 0.538
Acid_4210
Alpha-L-fucosidase; PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: ret:RHE_PF00304 probable alpha-L-fucosidase protein.
 
  
 0.528
Acid_1827
KEGG: aba:Acid345_1711 hypothetical protein.
       0.527
Acid_0811
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: aba:Acid345_4310 sugar phosphate isomerase/epimerase.
  
     0.518
Acid_0915
PFAM: glycoside hydrolase, family 29 (alpha-L-fucosidase); KEGG: bth:BT3665 alpha-L-fucosidase precursor.
 
  
 0.517
Acid_4396
Beta-galactosidase; PFAM: Glycoside hydrolase, family 42, N-terminal domain protein; Beta-galactosidase trimerisation domain protein; KEGG: bth:BT4152 beta-galactosidase I.
  
     0.517
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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