STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1890PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; KEGG: dar:Daro_0045 ABC transporter related. (569 aa)    
Predicted Functional Partners:
Acid_1602
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: mca:MCA0908 ATPase, AAA family.
  
  
 0.855
Acid_1889
PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: sth:STH2723 ABC transporter ATP-binding protein.
 
 
 
0.831
Acid_1891
Hypothetical protein.
       0.757
Acid_4810
PFAM: short-chain dehydrogenase/reductase SDR; MaoC domain protein dehydratase; KEGG: pfo:Pfl_0654 MaoC-like dehydratase.
   
 
 0.594
Acid_4571
PFAM: band 7 protein; Flotillin domain protein; KEGG: aba:Acid345_1402 flotillin.
     
 0.541
Acid_1012
PFAM: RecA domain protein; SMART: AAA ATPase; KEGG: lpl:lp_2301 recombinase A; Belongs to the RecA family.
   
   0.540
recA
recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
   
   0.540
Acid_7037
PFAM: RecA domain protein; KEGG: aba:Acid345_4045 RecA/RadA recombinase-like.
   
   0.540
Acid_1888
Hypothetical protein.
       0.538
Acid_1892
PFAM: isochorismatase hydrolase; KEGG: rba:RB1599 hypothetical protein-signal peptide and transmembrane prediction.
   
   0.517
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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