STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1900PFAM: protein of unknown function DUF1080; KEGG: aba:Acid345_2324 protein of unknown function DUF1080. (317 aa)    
Predicted Functional Partners:
Acid_2979
PFAM: protein of unknown function DUF1080; KEGG: rba:RB9439 putative large multi-functional protein.
  
     0.773
Acid_1864
KEGG: rba:RB728 conserved hypothetical protein, putative cytochrome c.
  
     0.747
Acid_2627
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.732
Acid_5692
PFAM: protein of unknown function DUF1080; KEGG: sru:SRU_2533 probable secreted glycosyl hydrolase.
  
     0.718
Acid_7742
PFAM: protein of unknown function DUF1080; KEGG: rba:RB728 conserved hypothetical protein, putative cytochrome c.
  
     0.692
Acid_4531
PFAM: protein of unknown function DUF1080; KEGG: rba:RB569 conserved hypothetical protein, putative secreted protein.
  
     0.690
Acid_0812
PFAM: protein of unknown function DUF1080; KEGG: rba:RB5031 hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.689
Acid_2072
PFAM: lipolytic enzyme, G-D-S-L family; KEGG: nar:Saro_3112 lipolytic enzyme, G-D-S-L.
  
     0.689
Acid_7383
KEGG: sru:SRU_2528 Tat (twin-arginine translocation) pathway signal sequence domain protein.
 
     0.680
Acid_7533
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: rba:RB12073 hypothetical protein.
 
   
 0.660
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.