STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1918PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: aba:Acid345_4594 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Acid_1917
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: aba:Acid345_4595 transcriptional regulator, ArsR family.
 
    0.895
Acid_1916
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_3591 ABC efflux pump, inner membrane subunit.
 
     0.805
Acid_1915
SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
       0.588
Acid_3039
KEGG: bte:BTH_II1623 hypothetical protein.
 
     0.560
Acid_1919
KEGG: rru:Rru_A1415 protein of unknown function DUF132.
       0.536
Acid_1920
KEGG: plu:plu2302 hypothetical protein.
       0.536
Acid_1573
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mlr8183 hypothetical protein.
  
     0.524
Acid_3366
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: ret:RHE_CH03490 probable transcriptional regulator protein, ArsR family.
 
    0.515
Acid_0211
KEGG: pha:PSHAa1861 hypothetical protein.
  
     0.437
Acid_6250
PFAM: putative esterase; KEGG: mxa:MXAN_0566 hydrolase.
  
     0.435
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.