Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1920KEGG: plu:plu2302 hypothetical protein. (91 aa)    
Predicted Functional Partners:
Acid_3458
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: aae:aq_481 peptide transport system permease protein.
  
 0.966
Acid_3459
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr1357 peptide ABC transporter ATP-binding protein.
  
 0.956
Acid_3460
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rru:Rru_A2175 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like.
  
 0.897
Acid_3456
PFAM: extracellular solute-binding protein, family 5; KEGG: aae:aq_1441 peptide transport system substrate-binding protein.
  
 0.855
Acid_7875
PFAM: extracellular solute-binding protein, family 5; KEGG: aba:Acid345_1732 ABC peptide transporter, periplasmic ligand binding protein.
  
 0.855
Acid_1919
KEGG: rru:Rru_A1415 protein of unknown function DUF132.
       0.782
Acid_1916
PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_3591 ABC efflux pump, inner membrane subunit.
  
    0.539
Acid_1917
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: aba:Acid345_4595 transcriptional regulator, ArsR family.
       0.536
Acid_1918
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: aba:Acid345_4594 hypothetical protein.
       0.536
Acid_0827
PFAM: ABC-3 protein; KEGG: aae:aq_2165 putative manganese transport system permease protein.
     
 0.412
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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