STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1949PFAM: FG-GAP repeat protein; KEGG: rba:RB13131 similar to cysteine proteinase. (656 aa)    
Predicted Functional Partners:
Acid_1947
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: pac:PPA0468 putative myo-inositol catabolism protein.
 
     0.847
Acid_1864
KEGG: rba:RB728 conserved hypothetical protein, putative cytochrome c.
  
     0.771
Acid_1948
PFAM: Pyrrolo-quinoline quinone; cytochrome c, class I; KEGG: xcb:XC_2659 glucose dehydrogenase.
 
     0.768
Acid_7740
KEGG: rba:RB12035 hypothetical protein.
  
     0.768
Acid_1122
Dipeptidyl aminopeptidases/acylaminoacyl-peptidase-like protein; KEGG: eca:ECA3785 hypothetical protein.
  
     0.759
Acid_1946
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: cch:Cag_1169 TPR repeat.
 
 
   0.750
Acid_7742
PFAM: protein of unknown function DUF1080; KEGG: rba:RB728 conserved hypothetical protein, putative cytochrome c.
  
     0.749
Acid_7816
KEGG: rba:RB1535 hypothetical protein.
  
     0.744
Acid_3164
Hypothetical protein; KEGG: rba:RB605 arylsulfatase precursor.
  
     0.730
Acid_3745
PFAM: protein of unknown function DUF1501; KEGG: rba:RB3808 hypothetical protein.
  
     0.725
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.