Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1950PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_4600 peptidase M20. (462 aa)    
Predicted Functional Partners:
Acid_1951
KEGG: aba:Acid345_3021 glycosyl hydrolase, BNR repeat.
       0.773
Acid_1952
PFAM: TonB-dependent receptor, plug; KEGG: aba:Acid345_0395 hypothetical protein.
       0.762
Acid_1953
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: aba:Acid345_2533 hypothetical protein.
       0.470
Acid_1954
Amidohydrolase; PFAM: peptidase S9B, dipeptidylpeptidase IV domain protein; amidohydrolase; WD40 domain protein beta Propeller; KEGG: ade:Adeh_2230 hypothetical protein.
       0.470
Acid_6984
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: aba:Acid345_1040 peptidase dimerisation.
  
     0.413
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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