STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1963PFAM: YcfA family protein; KEGG: syn:ssr1260 hypothetical protein. (74 aa)    
Predicted Functional Partners:
Acid_1962
PFAM: protein of unknown function UPF0150; KEGG: mac:MA4125 hypothetical protein.
 
 
 0.966
Acid_4330
KEGG: eba:ebA7092 hypothetical protein, predicted transcription regulator.
  
  
 0.743
Acid_0056
PFAM: protein of unknown function UPF0150; KEGG: mma:MM0031 hypothetical protein.
 
 
 0.731
Acid_4331
KEGG: sde:Sde_2786 hypothetical protein.
  
  
 0.717
Acid_3909
TIGRFAM: addiction module toxin, Txe/YoeB family; PFAM: Addiction module toxin, Txe/YoeB; KEGG: ana:asl0171 hypothetical protein.
  
  
 0.708
Acid_2061
PFAM: HipA domain protein; KEGG: neu:NE1310 possible HipA protein.
     
 0.651
Acid_7347
PFAM: protein of unknown function UPF0150; KEGG: syn:slr1999 hypothetical protein.
 
 
 0.628
Acid_2532
Transcriptional modulator of MazE/toxin, MazF; Toxic component of a type II toxin-antitoxin (TA) system.
  
  
 0.626
Acid_5893
PFAM: protein of unknown function UPF0150; KEGG: cch:Cag_0609 hypothetical protein.
 
 
 0.593
Acid_7793
KEGG: mta:Moth_0412 2-oxoisovalerate dehydrogenase, E1 component beta subunit.
 
 
 0.590
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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