Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1964PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: aba:Acid345_0919 ASPIC/UnbV. (568 aa)    
Predicted Functional Partners:
Acid_3483
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1682 TPR repeat protein.
  
  0.793
Acid_1965
Tetratricopeptide TPR_4; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ath:At3g04240 O-linked N-acetyl glucosamine transferase, putative.
       0.701
Acid_6162
PFAM: FG-GAP repeat protein; KEGG: ava:Ava_0582 integrins alpha chain.
  
     0.680
Acid_0721
FG-GAP repeat protein; PFAM: Ig domain protein, group 1 domain protein; FG-GAP repeat protein; KEGG: yps:YPTB3789 possible bacterial Ig-like domain (group 1).
  
     0.665
Acid_3833
KEGG: ddi:DDB0189138 hypothetical protein.
 
    0.591
Acid_1962
PFAM: protein of unknown function UPF0150; KEGG: mac:MA4125 hypothetical protein.
       0.486
Acid_1963
PFAM: YcfA family protein; KEGG: syn:ssr1260 hypothetical protein.
       0.486
Acid_3484
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1683 tetratricopeptide repeat protein.
  
     0.443
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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