Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1966Hypothetical protein; KEGG: aba:Acid345_4154 TonB-dependent receptor. (1229 aa)    
Predicted Functional Partners:
Acid_7026
KEGG: ccr:CC0925 OmpA-related protein.
  
    0.764
Acid_1024
KEGG: aba:Acid345_4220 hypothetical protein.
  
     0.763
Acid_1280
TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; KEGG: aba:Acid345_0148 TonB-like protein.
  
   0.751
Acid_1509
KEGG: aba:Acid345_3322 hypothetical protein.
  
     0.730
Acid_2218
KEGG: aba:Acid345_3561 hypothetical protein.
  
     0.719
Acid_2410
PFAM: Radical SAM domain protein; KEGG: aba:Acid345_0793 Fe-S protein, radical SAM family.
  
     0.714
Acid_1568
KEGG: aba:Acid345_2141 hypothetical protein.
  
     0.698
Acid_4832
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A.
  
     0.692
Acid_5910
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2058 von Willebrand factor, type A.
  
     0.686
Acid_5185
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2505 von Willebrand factor, type A.
  
     0.682
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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