Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1967KEGG: gvi:glr0823 unknown protein. (957 aa)    
Predicted Functional Partners:
Acid_0676
PFAM: glycosyl hydrolase, BNR repeat-containing protein; KEGG: aba:Acid345_3271 glycosyl hydrolase, BNR repeat.
  
     0.770
Acid_1640
PFAM: peptidase M14, carboxypeptidase A; KEGG: ccr:CC0985 hypothetical protein.
  
     0.551
Acid_3532
PFAM: peptidase M14, carboxypeptidase A; KEGG: gvi:gll2474 hypothetical protein.
  
     0.535
Acid_6585
KEGG: gvi:gll0760 hypothetical protein.
  
     0.525
Acid_2646
KEGG: aba:Acid345_3020 conserved hypothetical signal peptide protein.
  
     0.518
Acid_5004
KEGG: gvi:gll0760 hypothetical protein.
  
     0.518
Acid_1968
PFAM: Cna B domain protein; KEGG: aba:Acid345_0395 hypothetical protein.
       0.423
Acid_1969
PFAM: amidohydrolase; KEGG: aba:Acid345_1826 amidohydrolase.
       0.415
Acid_2017
Glutamyl peptidase. Serine peptidase. MEROPS family S09D; PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; KEGG: cvi:CV2080 hypothetical protein.
  
     0.411
Acid_3043
KEGG: aba:Acid345_1066 hypothetical protein.
  
     0.409
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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