Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1978Transcriptional regulator, Fis family; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sru:SRU_0006 retinol dehydrogenase 11; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (311 aa)    
Predicted Functional Partners:
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
  
 0.959
Acid_1977
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: ccr:CC3175 short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  0.927
Acid_1976
PFAM: alpha/beta hydrolase fold; KEGG: sto:ST1414 hypothetical tropinesterase.
 
  0.863
Acid_3077
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_0465 beta-ketoacyl synthase.
 
 0.849
Acid_1973
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; 4'-phosphopantetheinyl transferase; KEGG: gvi:gll4225 probable glycolipid synthase.
 
 0.846
Acid_1974
KEGG: gvi:gsl4224 probable acyl carrier protein.
  
  0.815
Acid_1979
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_2393 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
0.809
Acid_4571
PFAM: band 7 protein; Flotillin domain protein; KEGG: aba:Acid345_1402 flotillin.
 
      0.747
Acid_1975
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: gvi:gll4223 unknown protein.
       0.746
Acid_3654
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gvi:glr4355 probable oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.673
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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