Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1982Hypothetical protein; KEGG: neu:NE0902 periplasmic component of the Tol biopolymer transport system. (407 aa)    
Predicted Functional Partners:
Acid_1980
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28, C-terminal domain; KEGG: dra:DRA0329 glycosyltransferase, putative.
       0.773
Acid_1981
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; KEGG: dra:DRA0329 glycosyltransferase, putative.
       0.773
Acid_1983
KEGG: gvi:gll4222 unknown protein.
       0.773
Acid_1984
PFAM: glycosyl transferase, family 28; KEGG: gvi:gll2420 hypothetical protein.
       0.718
Acid_1985
PFAM: glycosyl transferase, family 28; KEGG: gvi:gll2420 hypothetical protein.
       0.718
Acid_1986
Na+/melibiose symporter and related transporter-like protein; KEGG: syf:Synpcc7942_0571 sugar (glycoside-Pentoside-Hexuronide) transporter.
       0.680
Acid_1987
Hypothetical protein.
       0.680
Acid_1979
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_2393 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.642
Acid_1978
Transcriptional regulator, Fis family; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: sru:SRU_0006 retinol dehydrogenase 11; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.595
Acid_1976
PFAM: alpha/beta hydrolase fold; KEGG: sto:ST1414 hypothetical tropinesterase.
       0.591
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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