STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1985PFAM: glycosyl transferase, family 28; KEGG: gvi:gll2420 hypothetical protein. (429 aa)    
Predicted Functional Partners:
Acid_1984
PFAM: glycosyl transferase, family 28; KEGG: gvi:gll2420 hypothetical protein.
 
    
0.802
Acid_1981
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; KEGG: dra:DRA0329 glycosyltransferase, putative.
 
    
0.789
Acid_1980
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; Glycosyltransferase 28, C-terminal domain; KEGG: dra:DRA0329 glycosyltransferase, putative.
 
    
0.786
Acid_1972
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; short-chain dehydrogenase/reductase SDR; 2-nitropropane dioxygenase, NPD; KR; KEGG: fra:Francci3_0926 beta-ketoacyl synthase.
 
  
 0.753
Acid_1986
Na+/melibiose symporter and related transporter-like protein; KEGG: syf:Synpcc7942_0571 sugar (glycoside-Pentoside-Hexuronide) transporter.
  
    0.744
Acid_1987
Hypothetical protein.
       0.732
Acid_1983
KEGG: gvi:gll4222 unknown protein.
       0.719
Acid_1982
Hypothetical protein; KEGG: neu:NE0902 periplasmic component of the Tol biopolymer transport system.
       0.718
Acid_1973
PFAM: beta-ketoacyl synthase; acyl transferase domain protein; 4'-phosphopantetheinyl transferase; KEGG: gvi:gll4225 probable glycolipid synthase.
 
  
 0.671
Acid_1979
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: aba:Acid345_2393 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.605
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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