STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1989PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: aba:Acid345_0920 ASPIC/UnbV. (575 aa)    
Predicted Functional Partners:
Acid_3833
KEGG: ddi:DDB0189138 hypothetical protein.
 
    0.684
Acid_6162
PFAM: FG-GAP repeat protein; KEGG: ava:Ava_0582 integrins alpha chain.
  
    0.669
Acid_1990
KEGG: aba:Acid345_0918 Cna B-type protein.
 
     0.637
Acid_3484
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1683 tetratricopeptide repeat protein.
  
     0.589
Acid_1991
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0917 tetratricopeptide repeat protein.
  
   0.512
Acid_5267
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: afm:Afu6g13270 exo-beta-1,3-glucanase.
  
     0.436
Acid_2637
PFAM: SMP-30/Gluconolaconase/LRE domain protein; KEGG: afm:Afu6g13270 exo-beta-1,3-glucanase.
  
     0.425
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.