Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1990KEGG: aba:Acid345_0918 Cna B-type protein. (1145 aa)    
Predicted Functional Partners:
Acid_1024
KEGG: aba:Acid345_4220 hypothetical protein.
  
     0.766
Acid_6488
KEGG: aba:Acid345_1678 hypothetical protein.
  
     0.757
Acid_3484
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_1683 tetratricopeptide repeat protein.
  
     0.747
Acid_2410
PFAM: Radical SAM domain protein; KEGG: aba:Acid345_0793 Fe-S protein, radical SAM family.
  
     0.740
Acid_1121
KEGG: aba:Acid345_4732 hypothetical protein.
  
     0.718
Acid_4832
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2506 von Willebrand factor, type A.
  
     0.706
Acid_1568
KEGG: aba:Acid345_2141 hypothetical protein.
  
     0.701
Acid_3692
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_3993 von Willebrand factor, type A.
  
     0.695
Acid_5185
PFAM: von Willebrand factor, type A; KEGG: aba:Acid345_2505 von Willebrand factor, type A.
  
     0.692
Acid_7364
KEGG: aba:Acid345_1037 hypothetical protein.
  
    0.684
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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