Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Acid_1992PFAM: beta-lactamase; KEGG: sru:SRU_0951 beta-lactamase, putative. (657 aa)    
Predicted Functional Partners:
Acid_1991
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_0917 tetratricopeptide repeat protein.
       0.529
Acid_6091
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.525
Acid_2510
PFAM: beta-lactamase; KEGG: aba:Acid345_0637 beta-lactamase.
  
     0.522
Acid_5293
PFAM: beta-lactamase; KEGG: ccr:CC1567 hypothetical protein.
  
     0.488
Acid_4580
PFAM: beta-lactamase; KEGG: ava:Ava_1520 beta-lactamase.
  
     0.483
Acid_6249
PFAM: beta-lactamase; KEGG: mpa:MAP1113c hypothetical protein.
  
     0.474
Acid_1990
KEGG: aba:Acid345_0918 Cna B-type protein.
       0.456
Acid_6090
KEGG: rba:RB609 conserved hypothetical protein, putative xylan esterase.
  
     0.456
Acid_5605
PFAM: beta-lactamase; KEGG: aba:Acid345_3144 beta-lactamase.
  
     0.451
Acid_5034
PFAM: beta-lactamase; KEGG: btk:BT9727_0416 beta-lactamase (penicillin-binding protein) (penicillinase).
  
     0.442
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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