STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1997PFAM: glycoside hydrolase, family 35; KEGG: pho:PH0511 beta-galactosidase; Belongs to the glycosyl hydrolase 35 family. (750 aa)    
Predicted Functional Partners:
Acid_1996
SMART: AAA ATPase; KEGG: aba:Acid345_0060 DNA replication protein, DnaC-like.
       0.773
Acid_1995
PFAM: N-acetylmuramoyl-L-alanine amidase, family 2.
       0.658
Acid_7192
PFAM: nuclear protein SET; SMART: SET-related domain protein; KEGG: cel:C26E6.9b Set (trithorax/polycomb) domain containing protein 2, isoform b.
    
 0.649
Acid_6398
PFAM: HNH endonuclease; KEGG: RGD1564952_predicted, LOC304761; similar to zinc finger, RAN-binding domain containing 3 (predicted).
  
     0.623
Acid_1998
PFAM: aldo/keto reductase; KEGG: ava:Ava_0108 aldo/keto reductase.
       0.608
Acid_1999
KEGG: ade:Adeh_2156 hypothetical protein.
       0.608
Acid_6274
KEGG: sco:SCO6735 hypothetical protein.
  
     0.573
Acid_2000
KEGG: ade:Adeh_2155 hypothetical protein.
       0.564
Acid_3161
PFAM: acyl-CoA thioester hydrolase/bile acid-CoA amino acid N-acetyltransferase; KEGG: rso:RSc1887 putative acyl coenzyme A thioester hydrolase protein.
  
     0.553
Acid_0193
Exo-alpha-sialidase; KEGG: sma:SAV5606 neuramidase.
 
 0.529
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.