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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_1998PFAM: aldo/keto reductase; KEGG: ava:Ava_0108 aldo/keto reductase. (326 aa)    
Predicted Functional Partners:
Acid_1999
KEGG: ade:Adeh_2156 hypothetical protein.
       0.773
Acid_2000
KEGG: ade:Adeh_2155 hypothetical protein.
       0.714
Acid_1996
SMART: AAA ATPase; KEGG: aba:Acid345_0060 DNA replication protein, DnaC-like.
       0.608
Acid_1997
PFAM: glycoside hydrolase, family 35; KEGG: pho:PH0511 beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
       0.608
Acid_7299
PFAM: aldo/keto reductase; KEGG: ade:Adeh_2076 aldo/keto reductase.
 
     0.575
Acid_7296
PFAM: aldo/keto reductase; KEGG: aae:aq_323 hypothetical protein.
  
     0.536
Acid_1995
PFAM: N-acetylmuramoyl-L-alanine amidase, family 2.
       0.522
Acid_0846
PFAM: aldo/keto reductase; KEGG: rpc:RPC_3195 aldo/keto reductase.
 
 
0.446
Acid_6815
PFAM: aldo/keto reductase; KEGG: bpa:BPP3518 putative oxidoreductase.
 
 
0.402
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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