STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2000KEGG: ade:Adeh_2155 hypothetical protein. (125 aa)    
Predicted Functional Partners:
Acid_1999
KEGG: ade:Adeh_2156 hypothetical protein.
 
     0.940
Acid_7671
KEGG: aba:Acid345_1198 hypothetical protein.
  
     0.775
Acid_1998
PFAM: aldo/keto reductase; KEGG: ava:Ava_0108 aldo/keto reductase.
       0.714
Acid_1996
SMART: AAA ATPase; KEGG: aba:Acid345_0060 DNA replication protein, DnaC-like.
       0.564
Acid_1997
PFAM: glycoside hydrolase, family 35; KEGG: pho:PH0511 beta-galactosidase; Belongs to the glycosyl hydrolase 35 family.
       0.564
Acid_4487
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xoo:XOO2337 ABC transporter ATP-binding protein.
  
     0.538
Acid_0728
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1459 ABC transporter ATP-binding protein.
  
     0.529
Acid_6934
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1459 ABC transporter ATP-binding protein.
  
     0.511
Acid_1995
PFAM: N-acetylmuramoyl-L-alanine amidase, family 2.
       0.486
Acid_1708
KEGG: aba:Acid345_4444 hypothetical protein.
  
     0.481
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.