STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2004KEGG: aba:Acid345_1065 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase. (874 aa)    
Predicted Functional Partners:
Acid_2509
KEGG: aba:Acid345_1065 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
 
 
0.934
Acid_2003
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3768 tetratricopeptide repeat protein.
       0.747
Acid_2001
KEGG: eli:ELI_08855 phosphoribosylglycinamide formyltransferase protein.
       0.746
Acid_2002
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3980 serine/threonine protein kinase with TPR repeats.
       0.746
Acid_3567
PFAM: peptidase M23B; KEGG: aba:Acid345_4692 peptidase M23B.
 
   
 0.744
Acid_3049
PFAM: peptidase M23B; KEGG: gvi:gll2975 hypothetical protein.
 
   
 0.742
Acid_7312
PFAM: cell cycle protein; KEGG: aba:Acid345_3630 cell cycle protein; Belongs to the SEDS family.
  
   
 0.736
Acid_2005
KEGG: aba:Acid345_1064 hypothetical protein.
       0.701
Acid_2006
Hypothetical protein.
       0.701
Acid_4180
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: aba:Acid345_1465 peptidoglycan glycosyltransferase.
 
 
 
 0.675
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.