STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2004KEGG: aba:Acid345_1065 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase. (874 aa)    
Predicted Functional Partners:
Acid_4180
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: aba:Acid345_1465 peptidoglycan glycosyltransferase.
  
 
 0.965
Acid_4834
PFAM: penicillin-binding protein, transpeptidase; KEGG: aba:Acid345_3450 penicillin-binding protein, transpeptidase.
  
 
 0.957
Acid_0927
PFAM: penicillin-binding protein, transpeptidase; KEGG: aba:Acid345_3450 penicillin-binding protein, transpeptidase.
  
 
 0.954
mtgA
Monofunctional biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family.
 
 
0.947
Acid_2509
KEGG: aba:Acid345_1065 penicillin-binding protein 1A; TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase.
 
 
0.931
Acid_1026
D-Ala-D-Ala carboxypeptidase. Serine peptidase. MEROPS family S13; KEGG: aba:Acid345_4495 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: peptidase S13, D-Ala-D-Ala carboxypeptidase C.
     
 0.919
Acid_2001
KEGG: eli:ELI_08855 phosphoribosylglycinamide formyltransferase protein.
       0.746
Acid_2002
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3980 serine/threonine protein kinase with TPR repeats.
       0.746
Acid_2003
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: aba:Acid345_3768 tetratricopeptide repeat protein.
       0.746
Acid_3567
PFAM: peptidase M23B; KEGG: aba:Acid345_4692 peptidase M23B.
  
   
 0.741
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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