STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Acid_2007PFAM: Proline dehydrogenase; KEGG: aba:Acid345_1338 proline dehydrogenase. (303 aa)    
Predicted Functional Partners:
Acid_3538
TIGRFAM: putative delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_0400 delta-1-pyrroline-5-carboxylate dehydrogenase 2; Belongs to the aldehyde dehydrogenase family.
 0.996
Acid_0968
PFAM: aldehyde dehydrogenase; KEGG: gka:GK1411 aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 0.938
Acid_6729
PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_1381 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
 
 
 0.921
Acid_6579
PFAM: proline racemase; KEGG: xac:XAC2231 B-cell mitogen related protein.
    
 0.916
Acid_6005
PFAM: alpha/beta hydrolase fold; KEGG: bca:BCE1173 proline iminopeptidase, putative.
     
  0.900
Acid_6970
Prolyl aminopeptidase. Serine peptidase. MEROPS family S33; KEGG: ana:alr1270 proline iminopeptidase; TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; Belongs to the peptidase S33 family.
     
  0.900
Acid_2077
PFAM: aldehyde dehydrogenase; KEGG: sto:ST0064 glyceraldehyde-3-phosphate dehydrogenase, NADP dependent.
 
 
 0.839
Acid_6538
PFAM: aldehyde dehydrogenase; KEGG: aba:Acid345_0377 succinate-semialdehyde dehydrogenase (NAD(P)+).
 
 
 0.833
Acid_1107
PFAM: Na+/solute symporter; KEGG: mxa:MXAN_6190 transporter, solute:sodium symporter (SSS) family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.792
Acid_1233
TIGRFAM: SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: aba:Acid345_0324 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.792
Your Current Organism:
Solibacter usitatus
NCBI taxonomy Id: 234267
Other names: Acidobacteriaceae bacterium Ellin6076, Acidobacterium sp. Ellin6076, C. Solibacter usitatus Ellin6076, Candidatus Solibacter usitatus Ellin6076, Solibacter usitatus Ellin6076, bacterium Ellin6076
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